Function reference • CoMIT

All functions
`buildDBFromSchema()`	Build a database from a given SQL schema file
`build_COVID_DB()`	Build COVID-19 Analysis Database
`makeAssaySummaryTables()`	Make Assay Summary Tables
`makeAssaySummaryTablesCondensed()`	Make Assay Summary Tables (Condensed Version)
`makeCoOccHeatmaps()`	Make Heatmaps for Co-occurring mutations
`makeCoOccTables()`	Make Tables for Co-occurring mutations
`makeCoOccTablesCondensed()`	Make Tables for Co-occurring mutations (Condensed Version)
`makePrimerVarTable()`	Make primer variant visualization
`makedbBreakdownTable()`	Make Database Breakdown Table
`makedbBreakdownTableCondensed()`	Make Database Breakdown Table (Condensed Version)
`mismatchGenerator()`	Generate Mismatches for a primer sequence
`pull_subset_db()`	Pull subset DB
`translateMutationForward()`	Translate a Seq Change String to a Primer Template Mismatch for Forward primers
`translateMutationReverse()`	Translate a Seq Change String to a Primer Template Mismatch for Reverse primers
`update_db()`	Update DB (Add sequence info to a database)

Reference